Protein FDR Confidence: Combined	Accession	Description	Exp. q-value: Combined	Sum PEP Score	Coverage [%]	# Peptides	# PSMs	# Unique Peptides	# AAs	MW [kDa]	calc. pI	# Peptides (by Search Engine): A2 Sequest HT (MEF IgG)	# Peptides (by Search Engine): B2 Sequest HT (MEF Sel1L KO)	# Peptides (by Search Engine): C2 Sequest HT (MEF WT)	# Peptides (by Search Engine): D2 Sequest HT (MEF H KO)	# PSMs (by Search Engine): A2 Sequest HT (MEF IgG)	# PSMs (by Search Engine): B2 Sequest HT (MEF Sel1L KO)	# PSMs (by Search Engine): C2 Sequest HT (MEF WT)	# PSMs (by Search Engine): D2 Sequest HT (MEF H KO)	Abundance: F5: Sample, MEF IgG	Abundance: F6: Sample, MEF Sel1L KO	Abundance: F7: Sample, MEF WT	Abundance: F8: Sample, MEF H KO	Abundances Count: F5: Sample, MEF IgG	Abundances Count: F6: Sample, MEF Sel1L KO	Abundances Count: F7: Sample, MEF WT	Abundances Count: F8: Sample, MEF H KO	Modifications	Biological Process	Cellular Component	Molecular Function	Pfam IDs	Entrez Gene ID	Ensembl Gene ID	Gene Symbol	Chromosome	Reactome Pathways	KEGG Pathways	# Razor Peptides
High	P49135	General transcription and DNA repair factor IIH helicase subunit XPB OS=Mus musculus OX=10090 GN=Ercc3 PE=2 SV=1	0	10.575	6	4	4	4	783	89.1	7.18	1		2	1	1		2	1	1121501.625	345439.7813	951835.125	1712826.375	1	1	1	1		cell death;cell differentiation;metabolic process;regulation of biological process;response to stimulus	nucleus	catalytic activity;DNA binding;nucleotide binding;protein binding	"Pf00271, Pf04851, Pf13625"	13872	ENSMUSG00000024382.13	Ercc3	18	mRNA Capping; RNA Polymerase II Transcription Initiation; RNA Polymerase II Pre-transcription Events; RNA Polymerase I Transcription Termination; Formation of Incision Complex in GG-NER; Formation of RNA Pol II elongation complex ; Formation of TC-NER Pre-Incision Complex; RNA Pol II CTD phosphorylation and interaction with CE; RNA Polymerase I Transcription Initiation; Dual incision in TC-NER; Dual Incision in GG-NER; TP53 Regulates Transcription of DNA Repair Genes; Formation of the Early Elongation Complex; RNA Polymerase I Promoter Escape; RNA Polymerase I Chain Elongation; Gap-filling DNA repair synthesis and ligation in TC-NER; RNA Polymerase II Promoter Escape; RNA Polymerase II Transcription Pre-Initiation And Promoter Opening	Basal transcription factors; Nucleotide excision repair	0

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